The diff should use unix style line endings that are replaced by windows on copy paste. :)
So to get rid of that the general guide is not to copy paste.
A question not sure if that will make any difference, but when you set up Git it ask you if you want to use overwrite windows cmd and some binaries with Linux if i remember correctly, will that make it possible to just copy and paste or is that totally irrelevant?
If you meant the copypasting of a diff directly, then that has to do with line endings that the clipboard does and git cant handle (git uses linux line endings and windows copy paste converts them to windows style line endings)
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